publication venue for
- Contemporary demographic reconstruction methods are robust to genome assembly quality: A case study in Tasmanian Devils. 2019
- Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression.. 34:2839-2855. 2017
- Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium. 33:1542-1553. 2016
- Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance. 33:885-897. 2016
- Inferring the Evolutionary History of IncP-1 Plasmids Despite Incongruence among Backbone Gene Trees.. 30:154-166. 2013
- Good Codons, Bad Transcript: Large Reductions in Gene Expression and Fitness Arising from Synonymous Mutations in a Key Enzyme. 30:549-560. 2012
- Approximating Model Probabilities in Bayesian Information Criterion and Decision-Theoretic Approaches to Model Selection in Phylogenetics. 28:343-349. 2011
- Assessment of Substitution Model Adequacy Using Frequentist and Bayesian Methods. 27:2790-2803. 2010
- Comparing Models of Evolution for Ordered and Disordered Proteins. 27:609-621. 2010
- Genic Incompatibilities In Two Hybrid Bacteriophages. 26:2831-2839. 2009
- A broadscale phylogenetic analysis of group {II} intron {RNAs} and intron-encoded reverse transcriptases. 26:2795-2808. 2009
- Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation. 22:691-703. 2005
- Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation. 22:1386-1392. 2005
- Stabilizing Selection on Behavior and Morphology Masks Positive Selection on the Signal in a Salamander Pheromone Signaling Complex. 21:1032-1041. 2004
- Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. 19:762-776. 2002
- The power to detect recombination using the coalescent. 18:1421-1424. 2001
- Big-benefit Mutations In a Bacteriophage Inhibited With Heat. 17:942-950. 2000
- Phylogeny and Divergence Times in Pinaceae: Evidence From Three Genomes. 17:773-781. 2000
- The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models. 16:1347-1356. 1999
- 28S and 18S rDNA sequences support the monophyly of lampreys and hagfishes. 15:1706-1718. 1998
- Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. 15:931-942. 1998
- Unusual Pattern of Bacterial Ice Nucleation Gene Evolution. 11:911-920. 1994
- Molecular Phylogenetics of Stenodermatini Bat Genera - Congruence of Data From Nuclear and Mitochondrial-DNA. 10:944-959. 1993