selected publications
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academic article
- Panmixia in spiders (Mecaphesa celer, Thomisidae) despite fragmented habitat at Craters of the Moon in Idaho. Ecological Entomology. 47:645-656. 2022
- Estimation of the strength of mate preference from mated pairs observed in the wild. Evolution. 76:29-41. 2022
- Evolution of reproductive life-history and dispersal traits during the range expansion of a biological control agent. Evolutionary Applications. 2022
- Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control. Evolutionary Applications. 15:60-77. 2022
- Spatial variation in gene expression of Tasmanian devil facial tumors despite minimal host transcriptomic response to infection. BMC Genomics. 22. 2021
- Contemporary and Historical Selection in Tasmanian Devils (Sarcophilus harrisii) Support Novel, Polygenic Response to Transmissible Cancer. Proceedings of the Royal Society B: Biological Sciences. 288:20210577. 2021
- Authors' Reply to Letter to the Editor: Continued improvement to genetic diversity indicator for CBD. Conservation Genetics. 2021
- Darwin, the Devil, and the Management of Transmissible Cancers. Conservation Biology. 35:748-751. 2021
- Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent.. Systematic Biology. 70:203-218. 2021
- Sharing and Reporting Benefits from Biodiversity Research. Molecular Ecology. 30:1103-1107. 2021
- Effective Population Size Remains a Suitable, Pragmatic Indicator of Genetic Diversity for All Species, Including Forest Trees. Biological Conservation. 253:108906. 2021
- The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern. Molecular Ecology. 30:4673-4694. 2021
- A Transmissible Cancer Shifts from Emergence to Endemism in Tasmanian Devils. Science (New York, N.Y). 370:1293. 2020
- Infectious Disease and Sickness Behaviour: Tumour Progression Affects Interaction Patterns and Social Network Structure in Wild Tasmanian Devils. Proceedings of the Royal Society B: Biological Sciences. 287:20202454. 2020
- Intercontinental Genomic Parallelism in Multiple Three-spined Stickleback Adaptive Radiations. Nature Ecology and Evolution. 2020
- Population Genomics for Wildlife Conservation and Management. Molecular Ecology. 2020
- Wireworm (Coleoptera: Elateridae) Genomic Analysis Reveals Putative Cryptic Species, Population Structure, and Adaptation to Pest Control. Communications Biology. 3:489. 2020
- Spontaneous Tumor Regression in Tasmanian Devils Associated with RASL11A Activation. Genetics. 215:1143-1152. 2020
- Post-2020 Goals Overlook Genetic Diversity. Science (New York, N.Y). 367:1083-1085. 2020
- Population Genomics Training for the Next Generation of Conservation Geneticists: ConGen 2018 Workshop. The Journal of heredity. 111:227-236. 2020
- Comparative landscape genetics reveals differential effects of environment on host and pathogen genetic structure in Tasmanian devils (Sarcophilus harrisii) and their transmissible tumor.. Molecular Ecology. 2020
- Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations. Evolution. 2020
- Long-lived marine species may be resilient to environmental variability through a temporal portfolio effect. Ecology and Evolution. 2020
- Spontaneous Tumor Regression in Tasmanian Devils Associated with RASL11A Activation.. Genetics. 215:1143-1152. 2020
- Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils. Molecular Biology and Evolution. 36:2906-2921. 2019
- Transcriptomics of Tasmanian Devil (Sarcophilus Harrisii) Ear Tissue Reveals Homogeneous Gene Expression Patterns across a Heterogeneous Landscape. Genes. 10:801. 2019
- Mitochondrial Genome Sequences of Diorhabda carinata and Diorhabda carinulata, Two Beetle Species Introduced to North America for Biological Control. Microbiology Resource Announcements. 8. 2019
- Tracing the Rise of Malignant Cell Lines: Distribution, Epidemiology and Evolutionary Interactions of Two Transmissible Cancers in Tasmanian Devils. Evolutionary Applications. 2019
- Abstracts from the 2019 Annual Meeting of the Society for Northwestern Vertebrate Biology, Held Jointly with the Washington Chapter of the Wildlife Society, and in Association with Northwest Partners in Amphibian and Reptile Conservation, at Great Wolf Lodge, Grand Mound, Washington, 25 February-1 March 2019. Northwestern Naturalist. 100:132. 2019
- Conserving adaptive potential: lessons from Tasmanian devils and their transmissible cancer. Conservation Genetics. 20:81-87. 2019
- Individual and temporal variation in pathogen load predicts long-term impacts of an emerging infectious disease. Ecology. 100:UNSP e02613. 2019
- Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer. Molecular Ecology. 27:4189-4199. 2018
- The Genomic Basis of Tumor Regression in Tasmanian Devils (Sarcophilus harrisii). Genome Biology and Evolution. 10:3012-3025. 2018
- A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data.. Molecular Ecology Resources. 18:1263-1281. 2018
- The devil is in the details: Genomics of transmissible cancers in Tasmanian devils. PLOS Pathogens. 14:e1007098. 2018
- Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa. Heredity. 122:133-149. 2018
- Population Genomic Analysis of North American Eastern Wolves (Canis lycaon) Supports Their Conservation Priority Status.. Genes. 9. 2018
- Recent advances in conservation and population genomics data analysis. Evolutionary Applications. 11:1197-1211. 2018
- Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii). Conservation Genetics. 18.0:977.0-982.0. 2017
- Comment on "Whole-genome sequence analysis shows two endemic species of North American wolf are admixtures of the coyote and gray wolf".. Science Advances. 3. 2017
- Infection of the fittest: devil facial tumour disease has greatest effect on individuals with highest reproductive output. Ecology Letters. 20.0:770.0-778.0. 2017
- Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations.. Molecular Ecology Resources. 17:362-365. 2017
- Vive la resistance: genome-wide selection against introduced alleles in invasive hybrid zones. Proceedings of the Royal Society B: Biological Sciences. 183. 2016
- Development and characterization of fourteen novel microsatellite markers for the chestnut short-tailed fruit bat (Carollia castanea), and cross-amplification to related species. PeerJ. 4:e2465. 2016
- Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia. Molecular Ecology. 25:4161-4176. 2016
- The ecology of an adaptive radiation of three-spined stickleback from North Uist, Scotland. Molecular Ecology. 25:4319-4336. 2016
- Rapid evolutionary response to a transmissible cancer in Tasmanian devils. Nature Communications. 7. 2016
- Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis). Molecular Ecology. 25:2176-2194. 2016
- Genetic diversity and population structure of Raffaelea quercus-mongolicae, a fungus associated with oak mortality in South Korea. Forest Pathology. 46:164-167. 2016
- Conservation genomics of natural and managed populations: building a conceptual and practical framework.. Molecular Ecology. 25:2967-2977. 2016
- Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest. Genome Announcements. 4. 2016
- Harnessing the power of RADseq for ecological and evolutionary genomics.. Nature Reviews Genetics. 17:81-92. 2016
- RAD sequencing and genomic simulations resolve hybrid origins within North American Canis. Biology Letters. 11. 2015
- Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing. Current Zoology. 61:146-154. 2015
- Trait dimensionality explains widespread variation in local adaptation. Proceedings of the Royal Society B: Biological Sciences. 282. 2015
- Ecological genomics in full colour. Molecular Ecology. 23:5129-5131. 2014
- Genotyping-by-sequencing in ecological and conservation genomics. Molecular Ecology. 22:2841-2847. 2013
- Stacks: an analysis tool set for population genomics. Molecular Ecology. 22:3124-3140. 2013
- Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing. Molecular Ecology. 22:3002-3013. 2013
- Harnessing genomics for delineating conservation units. Trends in Ecology and Evolution. 27:489-496. 2012
- Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics. PLOS One. 7. 2012
- Developmental dissociation in morphological evolution of the stickleback opercle. Evolution and Development. 14:326-337. 2012
- RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays. Molecular Ecology Resources. 12:653-660. 2012
- Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Philosophical Transactions of the Royal Society B: Biological Sciences. 367:395-408. 2012
- Dimensionality of sexual isolation during reinforcement and ecological speciation in Timema cristinae stick insects. Evolutionary Ecology Research. 14:467-485. 2012
- The effects of stochastic and episodic movement of the optimum on the evolution of the G-matrix and the response of the trait mean to selection. Journal of Evolutionary Biology. 25:2210-2231. 2012
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics. 12:499-510. 2011
- Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences. G3: Genes Genomes Genetics. 1:171-182. 2011
- Genomics and the future of conservation genetics. Nature Reviews Genetics. 11:697-709. 2010
- Resolving postglacial phylogeography using high-throughput sequencing. Proceedings of the National Academy of Sciences of the United States of America. 107:16196-16200. 2010
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags. PLOS Genetics. 6. 2010
- Dimensionality of mate choice, sexual isolation, and speciation. Proceedings of the National Academy of Sciences of the United States of America. 107:16583-16588. 2010
- Using population genomics to detect selection in natural populations: key concepts and methodological considerations. International Journal of Plant Sciences. 171:1059-1071. 2010
- Drift promotes speciation by sexual selection. Evolution. 63:583-594. 2009
- Understanding the evolution and stability of the G-Matrix. Evolution. 62:2451-2461. 2008
- A Publish-Subscribe Model of Genetic Networks. PLOS One. 3:e3245. 2008
- Estimating nonlinear selection gradients using quadratic regression coefficients: Double or nothing ?. Evolution. 62:2435-2440. 2008
- MIPoD: A hypothesis-testing framework for microevolutionary inference from patterns of divergence. American Naturalist. 171:366-385. 2008
- Characterizing species at risk II: Using Bayesian belief networks as decision support tools to determine species conservation categories under the Northwest Forest Plan. Ecology and Society. 11. 2006
- Comparative Landscape Genetics Reveals Differential Effects of Environment on Host and Pathogen Genetic Structure in Tasmanian devils (Sarcophilus harrisii) and their Transmissible Tumour. Molecular Ecology.
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article
- Considering all the evidence: a reply to Sefc and Koblmüller (2016). Biology Letters. 12:20151009. 2016
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chapter
- Population genomic analysis of model and nonmodel organisms using sequenced {RAD} tags. Data Production and Analysis in Population Genomics: Methods and Protocols. 235-260. 2012
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dataset