selected publications
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academic article
- Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China). Ecology and Evolution. 12. 2022
- Complex Population Dynamics in a Spatial Microbial Ecosystem with Physarum polycephalum. Bio Systems. 2021
- SNT: A Unifying Toolbox for Quantification of Neuronal Anatomy. Nature Methods. 18:374-377. 2021
- Active Perception During Angiogenesis: Filopodia Speed up Notch Selection of Tip Cells in Silico and In Vivo. Philosophical Transactions of the Royal Society B: Biological Sciences. 376:20190753. 2021
- Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy.. eLife. 9. 2020
- Escalation of Memory Length in Finite Populations. Artificial Life. 25:22-32. 2019
- Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish. Development (Cambridge, England). 146. 2019
- Maximizing Data Retrieval From Renal Biopsy Tissue Using Nonlinear Microscopy: Examining the Paraffin Block After Processing. Modern Pathology. 2019
- A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage.. Nature Cell Biology. 21:1102-1112. 2019
- Artificial Gene Regulatory Networks-A Review. Artificial Life. 24:296-328. 2019
- Acquisition and reconstruction of 4D surfaces of axolotl embryos with the flipping stage robotic microscope. Biosystems. 173:214-220. 2018
- FunImageJ: a Lisp framework for scientific image processing. Bioinformatics. 34:899-900. 2018
- Configurable NOR gate arrays from Belousov-Zhabotinsky micro-droplets. European Physical Journal: Special Topics. 225:211-227. 2016
- Temporal modulation of collective cell behavior controls vascular network topology. eLife. 5. 2016
- A circuit basis for morphogenesis. Theoretical Computer Science. 633:28-36. 2015
- Functional Image Processing in ImageJ/FIJI. Bioimage Information. 2015
- Gene Regulatory Network Evolution Through Augmenting Topologies. IEEE Transactions on Evolutionary Computation. 2015
- Eco-evolutionary dynamics of complex social strategies in microbial communities. Communicative and Integrative Biology. 7:pp-e28230. 2014
- Can active perception generate bistability?. Artificial Life. XIV:328-335. 2014
- Coevolution in Hide and Seek: Camouflage and Vision. Artificial Life. XIV:25-32. 2014
- Feedback Control of Evolving Swarms. Artificial Life. XIV:25-32. 2014
- The Resilience of a Swarm Ecosystem Under Environmental Variation. Artificial Life. XIV:827-834. 2014
- Computational Neuroecology of Communicated Somatic Markers. Artificial Life. XIII:555-556. 2012
- The Effects of Finite Populations and Selection on the Emergence of Signaling. Artificial Life. XIII:194-201. 2012
- HMC-1 human mast cells synthesize neurotensin (NT) precursor, secrete bioactive NT-like peptide(s) and express NT receptor NTS1. Inflammation Research. 60:1139-1151. 2011
- Imaging analysis of clock neurons: light buffers the wake-promoting effect of dopamine. Nature Neuroscience. 14:889-895. 2011
- Imaging analysis of clock neurons reveals light buffers the wake-promoting effect of dopamine. Nature Neuroscience. 14:889-U110. 2011
- Conspecific Emotional Cooperation Biases Population Dynamics: A Cellular Automata Approach. International Journal of Natural Computing Research. 1:51-65. 2010
- En route to signal inversion in chemical computing. Artificial Life. XII:166-167. 2010
- Adaptive Multi-modal Sensors. Lecture Notes in Computer Science. 4850:164-173. 2007
- Selection Songs: Evolutionary Music Computation. YLEM Journal. 25:24-26. 2005
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chapter
- What's in an Evolved Name? The Evolution of Modularity via Tag-Based Reference. Genetic Programming Theory and Practice IX. Ed. Moore, Jason H. 1-16. 2011
- Adaptive Multi-modal Sensors. 50 Years of Artificial Intelligence. Ed. Bongard, Josh C. 164-173. 2007
- On an Evolutionary Approach to Language. An Imitation-Based Approach to Modeling Homogenous Agents Socities. Ed. Trajkovski, Goran. IGI Global. 212-229. 2006
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conference paper
- Genetically-regulated Neuromodulation Facilitates Multi-Task Reinforcement Learning. Genetic and Evolutionary Computation Conference. 551-558. 2015
- Modeling Nonlinear Chemical Oscillators with Inhibitory Coupling. Northeast Bioengineering Conference. 2014
- Robot Coverage Control by Evolved Neuromodulation. 2013 International Joint Conference on Neural Networks (IJCNN). 543-550. 2014
- Autoconstructive Evolution for Structural Problems. Genetic and Evolutionary Computation Conference. 75-82. 2012
- Tag-based Modularity in Tree-based Genetic Programming. (GECCO) 2012 Annual Conference on Genetic and Evolutionary Computation. 815-822. 2012
- The Effect of Tags on the Evolution of Honest Signaling. Genetic and Evolutionary Computation Conference. 345-352. 2012
- Communicated Somatic Markers Benefit the Individual and the Species. 2011 International Joint Conference on Neural Networks. 3272-3278. 2011
- Compositional Autoconstructive Dynamics. International Conference on Complex Systems. 856-870. 2011
- Computational Emotions in a Population Dynamics Cellular Automata Encourage Collective Behavior. International Conference on Complex Systems. 196-210. 2011
- Fecundity and Selectivity in Evolutionary Computation. Genetic and Evolutionary Computation Conference. 129-130. 2011
- Tag-Based Modules in Genetic Programming. Genetic and Evolutionary Computation Conference. 1419-1426. 2011
- Robot Phylogenetics. Genetic and Evolutionary Computation Conference. 2077-2078. 2010
- Emotions for Strategic Real-Time Systems. AAAI Spring Symposium on Emotion, Personality, and Social Behavior. 104-110. 2008
- Predicting Reactions from Amino Acid Sequences in S. cerevisiae: an Evolutionary Computation Approach. Genetic and Evolutionary Computation Conference. 2725-2728. 2007
- Adaptive Multi-modal Sensors. Summit of Artificial Intelligence. 163-164. 2006
- Teaching the Evolution of Behavior with SuperDuperWalker. International Conference on Artificial Intelligence. 923-925. 2005
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report