selected publications
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academic article
- Filtering ASVs/OTUs via mutual information-based microbiome network analysis. BMC Bioinformatics. 23. 2022
- Effects of trust, risk perception, and health behavior on COVID-19 disease burden: Evidence from a multi-state US survey. PLOS One. 2022
- Fecal microbiome profiles of neonatal dairy calves with varying severities of gastrointestinal disease. PLOS One. 17. 2022
- Phage defence by deaminase-mediated depletion of deoxynucleotides in bacteria. Nature Microbiology. 2022
- Structural Identifiability of the Generalized Lotka-Volterra Model for Microbiome Studies. Royal Society Open Science. 8:201378. 2021
- Rhinovirus Reduces the Severity of Subsequent Respiratory Viral Infections by Interferon-Dependent and -Independent Mechanisms. MSPHERE. 6. 2021
- Structural identifiability of the generalized Lotka–Volterra model for microbiome studies. Royal Society Open Science. 8:201378. 2021
- Risk of Disease and Willingness to Vaccinate in the United States: A Population-based Survey. PLOS Medicine. 17:e1003354. 2020
- Comparison of the Vaginal Microbiomes of Premenopausal and Postmenopausal Women. Frontiers in Microbiology. 10:193. 2019
- Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations. PLOS Genetics. 15:e1008458. 2019
- Vaginal Biomarkers That Predict Cervical Length and Dominant Bacteria in the Vaginal Microbiomes of Pregnant Women.. MBio. 10. 2019
- Vaginal Glycogen, Not Estradiol, Is Associated With Vaginal Bacterial Community Composition in Black Adolescent Women. The Journal of adolescent health: official publication of the Society for Adolescent Medicine. 65:130-138. 2019
- Stability of equilibria in quantitative genetic models based on modified-gradient systems.. Journal of Biological Dynamics. 12:39-50. 2018
- Modeling time-series data from microbial communities. The ISME (International Society for Microbial Ecology) Journal. 11.0:2526.0-2537.0. 2017
- Persistence of antibiotic resistance plasmids in bacterial biofilms. Evolutionary Applications. 10.0:640.0-647.0. 2017
- Lung epithelial cells have virus-specific and shared gene expression responses to infection by diverse respiratory viruses. PLOS One. 12:e0178408. 2017
- Planning horizon affects prophylactic decision-making and epidemic dynamics. PeerJ. 4. 2016
- Whirling disease dynamics: an analysis of intervention strategies. Preventive Veterinary Medicine. 113:457-468. 2014
- Unraveling R0: Considerations for public health applications. American Journal of Public Health. 104:e32-e41. 2014
- A quantitative genetic approach to predicting ecological change in biological communities. Theoretical Ecology. 7:137-148. 2014
- Effectiveness of inactivated influenza vaccines inpreventing influenza-associated deaths and hospitalizations among Ontario residents aged 65 years: Estimates with generalized linear models accounting for healthy vaccinee effects. PLOS One. 8. 2013
- Commentary: Time-series analyses of count data to estimate the burden of seasonal infectious diseases. Epidemiology. 23:839-842. 2012
- The contribution of a pollinating seed predator to selection on Silene latifolia females. Journal of Evolutionary Biology. 25:461-472. 2012
- Controlling the spread of disease in schools. PLOS One. 6:e29640. 2011
- Antagonistic parent-offspring coadaptation. PLOS One. 5. 2010
- When is Correlation Coevolution?. American Naturalist. 175:525-537. 2010
- Can we "hedge" against the development of antiviral resistance among pandemic influenza vuses?. PLOS Medicine. 6. 2009
- Geographically variable selection in Ambystoma tigrinum Virus (Iridoviridae) throughout the Western United States. Journal of Evolutionary Biology. 21:958-965. 2008
- The Contribution of Parasitism to Selection on Floral Traits in Heuchera Grossulariifolia. Journal of Evolutionary Biology. 21:958-965. 2008
- Phylogenetic concordance analysis shows an emerging pathogen is novel and endemic. Ecology Letters. 10:1075-1083. 2007
- Patterns of genetic differentiation in Thamnophis and Taricha from the Pacific Northwest. Journal of Biogeography. 34:724-735. 2007
- Dos and Don'ts of Testing the Geographic Mosaic Theory of Coevolution. Heredity. 98:249-258. 2007
- Antagonistic Coevolution Mediated by Phenotypic Differences Between Quantitative Traits. Evolution. 61:1823-1834. 2007
- Polygenic Traits and Parasite Local Adaptation. Evolution. 61:368-376. 2007
- Tests of the influences of altitude and topography on genetic structure in the long-toed salamander (Ambystoma macrodactylum). Molecular Ecology. 16:1625-1637. 2007
- Nesting fidelity and molecular evidence for natal homing in the freshwater turtle, Graptemys kohnii. Proceedings of the Royal Society B: Biological Sciences. 272:1345-1350. 2005
- Identification of selective sources: partitioning selection based on interactions. American Naturalist. 166:12-25. 2005
- Resistance of Neonates and Field-Collected Garter Snakes (Thamnophis spp.) to Tetrodotoxin. Journal of Chemical Ecology. 30:143-154. 2004
- Reciprocal selection at the phenotypic interface of coevolution. Integrative and Comparative Biology. 43:408-419. 2003
- The evolutionary response of predators to dangerous prey: Hotspots and coldspots in the geographic mosaic of coevolution between garter snakes and newts. Evolution. 56:2067-2082. 2002
- Effects of repeated injections of tetrodotoxin on growth and resistance in the garter snake Thamnophis sirtalis. Copeia. 1999:531-535. 1999
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chapter
- Coevolution. Oxford Bibliographies in Evolutionary Biology. Ed. Losos, Jonathan B. New York: Oxford University Press. 2014
- Trait-mediated indirect interactions and the coevolutionary process. Ecology and Evolution of Trait-mediated Indirect Interactions: Linking Evolution, Community, and Ecosystem. Ed. Holt, Robert D. New York: Cambridge University Press. 207-220. 2012