selected publications
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abstract
- ChIP-Seq Genome-wide identification of regulatory elements in sheep alveolar macrophages . XXVI International Plant and Genomes Conference . 2018
- Characterizing allelic variation in the recombination hotspot mediator gene PRDM9 in U.S sheep. XXVI International Plant and Genomes Conference . 2018
- Meiotic recombination and chromosomal defects in hybrid beefalo and ruminant livestock spermatocytes. Cancer Genetics. 2018
- Differences in meiotic chromosome pairing characteristics in spermatocytes of hybrid beefalo . 36th International Society of Animal Genetic Conference . 2017
- Gene regulation in sheep alveolar macrophages: Genome-wide identification of active enhancers 2017
- Genome-Wide Identification of Active Enhancers in Sheep Alveolar Macrophages 2017
- Investigating genetic associations with meiotic recombination in rams. 36th International Society of Animal Genetic Conference . 2017
- Rambouillet Sheep Genome and FAANG RNA Resources 2017
- Rambouillet Sheep Genomic Resources 2017
- Rudimentary Genomic Reference for the Grizzly Bear Derived Using Short Date from Several Animals 2017
- The Ovine Functional Annotation Project . 36th International Society of Animal Genetic Conference . 2017
- Understanding Chromosome Pairing and Crossovers in Beefalo Spermatocytes 2017
- Understanding the Ramification of Recombination Variation in Sheep 2017
- Analysis of methylation patterns in bovine spermatozoa. Journal of Animal Science. 48. 2016
- Does Domestication affect the evolution of meiotic recombination in males differently 2016
- A Viewable Whole Genome Resource with four North American Moose Mapped to Cattle and Sheep 2016
- Meiotic recombination crossing-over into livestock species 2016
- Meiotic recombination differences in ruminant livestock species. Journal of Animal Science. 169. 2016
- The ramification of meiotic recombination differences in sheep. Journal of Animal Science. 109-110. 2016
- Genome-wide association study of classical BSE susceptibility or resistance in European Holstein cattle 2011
- Prion gene regulatory domain polymorphism associated with incidence of classical BSE in European Holstein cattle 2010
- Consequences of Maternal BPA on the primate fetal muscle transcriptome 2010
- Identification of factors that influence levels of meiotic crossing-over. Biology of Reproduction. 173. 2009
- A Genome scan for classical BSE susceptibility or resistance in European Holstein cattle 2008
- A Software Pipeline to Build High-Resolution Radiation Hybrid Maps 2008
- Identification of polymorphisms influencing production and functional traits on bovine chromosomes 19 and 29 in Canadian Holstein cattle 2008
- Genome Scan for BSE Susceptibility and/or Resistance in European Holstein Cattle 2007
- A Bovine Whole Genome Linkage Disequilibrium Map 2006
- A Chromosome-wide Scan for Quantitative Trait Loci Affecting Carcass Merit on Bovine Chromosome 19 in Beef Cattle 2006
- A Primary Genome-Wide Scan for Quantitative Trait Loci Affecting Feeding Behaviour Traits in Beef Cattle Plant 2006
- An Illumina Based Whole Genome Bovine-Human Comparative Map Constructed with High Throughput Methodology 2006
- Associations Between Single Nucleotide Polymorphism Markers on Bovine Chromosome 14 with Carcass Merit in Beef Cattle 2006
- Compilation and Construction of Oligo Pool Assays for Bovine Whole Genome SNP Verification Using the Illumina Beadstation 500g Genotyping System 2006
- Construction of a Radiation Hybrid Map of Bovine Chromosome 19 2006
- Genome-Wide Scan for QTL Affecting Feed Intake and Feed Efficiency in Beef Cattle 2006
- Haplotypes in the bovine leptin gene associated with serum leptin, feeding efficiency, growth and carcass merit 2006
- Haplotypes within the bovine GHR, NPY, and UCP genes and their associations with measures of performance and carcass merit in beef cattle 2006
- High Throughput Genotyping Enabling Rapid Construction of Whole Genome Radiation Hybrid Maps 2006
- Polymorphic Information Content Analysis of Genome-Wide Bovine SNPs 2006
- Polymorphisms in the GHR, NPY, Ghrelin, and UCP2 Genes and their Associations with Measures of Performance and Carcass Merit in Beef Cattle 2006
- SNP Detection and Mapping of a Backfat QTL Region on Bovine Chromosome 14 2006
- The Comparison of Whole Genome Amplified DNA with Use of the Illumina Beadstation 2006
- High throughput genotyping enabling rapid construction of whole genome radiation hybrid maps 2005
- Massive verification and mapping SNP in cattle using the Illumina Beadstation 500G genotyping system 2005
- Towards a bovine chromosomal linkage disequilibrium map: An integrated radiation hybrid map of Bos taurus chromosome 14 2005
- Association of a single nucleotide polymorphism in the bovine leptin gene with residual feed intake, feed DM and ME intake, growth traits, feeding behavior and carcass quality and composition 2002
- Distribution of haplotypes in BTA 6, 14, 19 and 21 within one commercial line of Bos taurus and their associations with growth traits 2002
- Identical by descent haplotype sharing analysis: application in fine mapping of QTLs for birth weight in commercial lines of Bos taurus 2002
- Identification and fine mapping for growth traits on bovine chromosomes 2, 5, 6, 19, 21, and 23 with one commercial line of Bos taurus 2002
- Mapping QTLs for Back Fat in Commercial Lines of Bos taurus 2002
- Relationship between residual feed intake, feed intake, growth, feed efficiency, and ultrasound carcass measurements in young hybrid beef calves 2002
- Distribution of haplotypes within a commercial line of Bos taurus cattle and their associations with growth traits 2001
- Fetal Exposure to Bisphenol A Causes Meiotic Defects and Abrnormal Follicle Formation in a Primate Model. Biology of Reproduction. 36.
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academic article
- Response of Rambouillet Lambs to an Artificial Gastrointestinal Nematode Infection. Animal. 12. 2022
- Ten simple rules to ruin a collaborative environment. PLOS Computational Biology. 18. 2022
- Variants Within Genes EDIL3 and ADGRB3 are Associated With Divergent Fecal Egg Counts in Katahdin Sheep at Weaning. Frontiers in Genetics. 13. 2022
- An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome. Gigascience. 11. 2022
- A high-density genome-wide association with absolute blood monocyte count in domestic sheep identifies novel loci. PLOS One. 17. 2022
- Single Nucleotide Polymorphism Effects on Lamb Fecal Egg Count Estimated Breeding Values in Progeny-Tested Katahdin Sires. Frontiers in Genetics. 13. 2022
- Examining the extent of environmental contributions toward DNA methylation and phenotypic variation. Animal Frontiers. 11:83-89. 2021
- Identifying genetic variants affecting cattle grazing behavior experiencing mild heat load. Translational Animal Science. 5:S61-S66. 2021
- Evolution of the Sheep Industry and Genetic Research in the United States: Opportunities for Convergence in the Twenty-first Century. Animal Genetics. 52:395-408. 2021
- Genes Involved in Immune, Gene Translation and Chromatin Organization Pathways Associated with Mycoplasma Ovipneumoniae Presence in Nasal Secretions of Domestic Sheep. PLOS One. 16:e0247209. 2021
- Characterizing Genetic Regulatory Elements in Ovine Tissues. Frontiers in Genetics. 12:628849. 2021
- Key genetic variants associated with variation of milk oligosaccharides from diverse human populations. Genomics. 113:1867-1875. 2021
- Genome-Wide Association Analyses of Fertility Traits in Beef Heifers. Genes. 12:217. 2021
- 42 An Improved, High-quality Ovine Reference Genome Assembly. Journal of Animal Science. 99.0:23-24. 2021
- PSI-18 Identifying genetic variants associated with grazing, walking, and slope use of cattle experiencing mild heat load. Journal of Animal Science. 99.0:281-281. 2021
- PSIV-16 Genome-wide association study of Rambouillet rams with angular limb deformities. Journal of Animal Science. 99.0:301-302. 2021
- PSV-6 Single nucleotide polymorphisms associated with advanced skeletal maturity in finished beef heifers. Journal of Animal Science. 99.0:308-309. 2021
- PSV-7 Sire fecal egg count EBV are predictive of offspring response to an artificial gastrointestinal nematode infection in Rambouillet sheep. Journal of Animal Science. 99.0:303-303. 2021
- Variation in type two taste receptor genes is associated with bitter tasting phenylthiocarbamide consumption in mature Targhee and Rambouillet rams. Translational Animal Science. 5. 2021
- Genome-wide association study to identify genetic loci associated with gastrointestinal nematode resistance in Katahdin sheep. Animal Genetics. 51:330-335. 2020
- A Novel Understanding of Global DNA Methylation in Bobcat (Lynx rufus).. Genome. 2020
- Genetic Structure and Admixture in Sheep from Terminal Breeds in the United States. Animal Genetics. 51:284-291. 2020
- Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0). Frontiers in Genetics. 11:580580. 2020
- The functional annotation of the sheep genome project. Journal of Animal Science. 16. 2019
- Global DNA Methylation in the Limbic System of Cattle. Epigenomes. 3:8. 2019
- Profiling Conservation of DNA Methylation in Cattle. Journal of Animal Science. 96:370-370. 2018
- A comparison of meiotic recombination in spermatocytes of cattle and sheep from the United States and Czech Republic. Journal of Animal Science. 96:45-45. 2018
- Suffolk Ram Yearling Breeding Potential Evaluation. Journal of Animal Science. 96:81-81. 2018
- Targeted Gene Evaluation for Association with Heifer Maturity Grading based upon Skeletal Ossification. Journal of Animal Science. 96:237-238. 2018
- Targeting Variation in the Mitochondrial Genomes of Bighorn and Domestic Sheep. Journal of Animal Science. 96:137-138. 2018
- Genomic testing of female Holsteins: a resource for selection and improvement. Translational Animal Science. 2:S149-S154. 2018
- Germ Cell-Specific Retinoic Acid Receptor alpha Functions in Germ Cell Organization, Meiotic Integrity, and Spermatogonia.. Endocrinology. 159:3403-3420. 2018
- A SNP resource for studying North American moose. F1000Research. 7:40. 2018
- Complete Mitochondrial Genome Sequence of Bighorn Sheep. Genome Announcements. 6:UNSP e00464-18. 2018
- Meiotic Recombination Differences in Rams from Three Breeds of Sheep in the US. Cytogenetic and Genome Research. 156:106-116. 2018
- Meiotic recombination and chromosomal defects in hybrid beefalo and ruminant livestock spermatocytes. Cancer Genetics. 224:63-64. 2018
- Nutritional Influence on Epigenetic Marks and Effect on Livestock Production. Frontiers in Genetics. 7:182. 2016
- Genetics of Prion Disease in Cattle. Bioinformatics and Biology Insights. 9. 2015
- Oncorhynchus mykiss pax7 sequence variations with comparative analyses against other teleost species. Springerplus. 4. 2015
- Germline mosaicism does not explain the maternal age effect on trisomy. American Journal of Medical Genetics. 161:2495-2503. 2013
- Altered cohesin gene dosage affects mammalian meiotic chromosome structure and behavior. PLOS Genetics. 9. 2013
- Bisphenol A alters early oogenesis and follicle formation in the fetal ovary of the rhesus monkey. Proceedings of the National Academy of Sciences of the United States of America. 109:17525-17530. 2012
- Genome-Wide Scan Identifies Loci Associated with Classical BSE Occurrence. PLOS One. 6:e26819. 2011
- Gene expression in the fetal mouse ovary is altered by exposure to low doses of bisphenol A. Biology of Reproduction. 84:79-86. 2011
- Multiple loci contribute to genome-wide recombination levels in male mice. Mammalian Genome. 21:550-555. 2010
- Use of SNP Genotyping to Determine Pedigree and Breed Composition of Dairy Cattle in Kenya. Journal of Animal Breeding and Genetics. 127:348-351. 2010
- PRNP Haplotype Associated with Classical BSE Incidence in European Holstein Cattle. PLOS One. 5:e12786. 2010
- A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. BMC Genetics. 11:20. 2010
- Maternal Exposure to Bisphenol A Alters Expression of Genes Associated with Carbohydrate Metabolism in Developing Fetal Cardiac Tissue. Biology of Reproduction. 81:192. 2009
- A whole genome scan to map QTL for milk production traits and somatic cell score in Canadian Holstein bulls. Journal of Animal Breeding and Genetics. 126:216-227. 2009
- Fine mapping quantitative trait loci for feed intake and feed efficiency in beef cattle. Journal of Animal Science. 87:37-45. 2009
- Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (New York, N.Y). 324:528-532. 2009
- A whole-genome scan to map quantitative trait loci for conformation and functional traits in Canadian Holstein bulls. Journal of Dairy Science. 91:2844-2856. 2008
- Identification of polymorphisms influencing feed intake and efficiency in beef cattle. Animal Genetics. 39:225-231. 2008
- An assessment of population structure in eight breeds of cattle using a whole genome SNP panel. BMC Genetics. 9:37. 2008
- Linkage disequilibrium and signatures on chromosomes 19 and 29 in beef and dairy cattle. Animal Genetics. 39:597-605. 2008
- Polymorphisms and haplotypes in the bovine neuropeptide Y, growth hormone receptor, ghrelin, insulin-like growth factor 2, and uncoupling proteins 2 and 3 genes and their associations with measures of growth, performance, feed efficiency, and carcass merit in beef cattle. Journal of Animal Science. 86:1-16. 2008
- A high resolution radiation hybrid map of bovine Chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC Genomics. 26:8-254. 2007
- A physical map of the bovine genome. Genome Biology. 8:R165. 2007
- Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping. Animal Genetics. 38:120-125. 2007
- Genetic analysis of flowering and maturity time in high latitude spring wheat. Euphytica. 154:207-218. 2007
- High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. BMC Genomics. 8:310-310. 2007
- Primary genome scan to identify putative quantitative trait loci for feedlot growth rate, feed intake, and feed efficiency of beef cattle. Journal of Animal Science. 85:3170-3181. 2007
- Whole genome linkage disequilibrium maps in cattle. BMC Genetics. 8. 2007
- Identification and fine mapping of quantitative trait loci for growth traits on bovine chromosomes 2, 14, 19, 21, and 23 within one commercial line of Bos Taurus. Journal of Animal Science. 82:3405-3414. 2004
- Different measures of energetic efficiency and their phenotypic relationships with growth, feed intake, and ultrasound and carcass merit in hybrid cattle. Journal of Animal Science. 82:2451-2459. 2004
- Identification of three microsatellite loci on bovine chromosome 19. Animal Genetics. 35:145-146. 2004
- Assessment of positional candidate gene MYF5 and IGF-1 for growth on bovine chromosome 5 in commercial lines of Bos Taurus. Journal of Animal Science. 82:1-7. 2004
- Assignment of the SIAT4A gene to bovine chromosome 14 by linkage mapping of an associated microsatellite. Animal Genetics. 35:146-147. 2004
- Fine mapping of quantitative traci loci and assessment of positional candidate genes for back fat on bovine chromosome 14 in a commercial line of Bos taurus. Journal of Animal Science. 81:1919-1925. 2003
- Association of a single nucleotide polymorphism in the bovine leptin gene with residual feed intake, feed DM and ME intake, growth traits, feeding behavior and carcass quality and composition. Canadian Journal of Animal Science. 84:211-219. 2003
- Identification and Fine mapping of QTL for backfat on bovine chromosomes 2, 5, 6, 19, 21, and 23 in a commercial line of Bos taurus. Journal of Animal Science. 82:967-972. 2003
- The identification of common haplotypes on bovine chromosome 5 within commercial lines of Bos taurus and their associations with growth traits. Journal of Animal Science. 80:1187-1194. 2002
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chapter
- Mapping the sheep genome. Achieving sustainable production of sheep. Ed. Greyling, Johan P C. London: Taylor & Francis. 115-132. 2017
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conference paper
- Meiotic Recombination in Ruminant Livestock Species. World Congress on Genetics Applied to Livestock Production. 2018
- Designer milk? Signatures of selection in human milk oligosaccharides. BEACON Congress. 2016
- Germline mosaicism does not explain the maternal age effect on trisomy. 13th International Congress of Human Genetics / American Society of Human Genetics 62nd Annual Meeting. 2012
- Polymorphisms in the leptin gene and their associations with performance, feed efficiency, and carcass merit of beef cattle. Eighth World Congress on Genetics Applied to Livestock Production. 2006
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conference poster
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dataset
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thesis