selected publications
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academic article
- An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity. Frontiers in Neuroanatomy. 16. 2022
- Evidence of regional specializations in regenerated zebrafish retina. Experimental Eye Research. 212. 2021
- Selective Requirements for Vascular Endothelial Cells and Circulating Factors in the Regulation of Retinal Neurogenesis. Frontiers in Cell Development Biology. 9:6283737. 2021
- Thyroid Hormone Treatment Reveals Plasticity of Gene Expression in Cone Photoreceptors of Adult Zebrafish. Journal of Investigative Medicine. 69:198. 2021
- Short-wavelength-sensitive 2 (Sws2) Visual Photopigment Models Combined with Atomistic Molecular Simulations to Predict Spectral Peaks of Absorbance. PLOS Computational Biology. 16:e1008212. 2020
- Endocrine regulation of multichromatic color vision. Proceedings of the National Academy of Sciences of the United States of America. 116:16882-16891. 2019
- Regeneration associated transcriptional signature of retinal microglia and macrophages. Scientific Reports. 9:4768. 2019
- Thyroid hormone regulates the tandemly-quadruplicated rh2 cone opsin gene array in zebrafish. Investigative Ophthalmology and Visual Science. 60. 2019
- Topographic Patterns of Regenerated Retinal Neurons in Zebrafish. Investigative Ophthalmology and Visual Science. 60. 2019
- Transcriptome analysis of adult zebrafish LWS1 vs LWS2 (long wavelength sensitive) cones. Investigative Ophthalmology and Visual Science. 60. 2019
- Vision using multiple distinct rod opsins in deep-sea fishes. Science (New York, N.Y). 364:588. 2019
- Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations. Investigative Ophthalmology and Visual Science. 14:blank. 2018
- Dynamic changes in microglial and macrophage characteristics during degeneration and regeneration of the zebrafish retina. Journal of Neuroinflammation. 15:163. 2018
- Expression patterns of dscam and sdk gene paralogs in developing zebrafish retina. Molecular Vision. 24:443-458. 2018
- Isolation of photoreceptors from mature, developing, and regenerated zebrafish retinas, and of microglia/macrophages from regenerating zebrafish retinas.. Experimental Eye Research. 177:130-144. 2018
- Predicting Spectral Shift in the Teleost Rh2 Cone Opsins using Molecular Dynamics Simulations. Biophysical Journal. 114:338A-338A. 2018
- Transcriptome Analysis of Zebrafish Microglia During Retinal Regeneration. Investigative Ophthalmology and Visual Science. 59. 2018
- Transcripts within rod photoreceptors of the Zebrafish retina. BMC Genomics. 19. 2018
- Characterization and Evolution of the Spotted Gar Retina. Journal of Experimental Zoology Part B - Molecular and Developmental Evolution. 326:403-421. 2016
- Abnormal retinal development in Cloche mutant zebrafish 2015
- Retinoic Acid Signaling Regulates Differential Expression of the Tandemly-Duplicated Long Wavelength-Sensitive Cone Opsin Genes in Zebrafish. PLOS Genetics. 11. 2015
- Mechanisms underlying ocular abnormalities in zebrafish embryos exposed to ethanol. Neurotoxicology and Teratology. 49:114-114. 2015
- Retinal regeneration is facilitated by the presence of surviving neurons. Developmental Neurobiology. 74:851-876. 2014
- Ethanol-induced microphthalmia is not mediated by changes in retinoic acid or sonic hedgehog signaling during retinal neurogenesis. Alcoholism, Clinical, and Experimental Research. 35. 2011
- Plasticity of photoreceptor-generating retinal progenitors revealed by prolonged retinoic acid exposure. BMC Developmental Biology. 11. 2011
- Retinal proliferation response in the buphthalmic zebrafish, bugeye. Experimental Eye Research. 93. 2011
- The rod photoreceptor lineage of teleost fish. Progress in Retinal and Eye Research. 30:395-404. 2011
- Toxic and teratogenic silica nanowires in developing vertebrate embryos. Nanomedicine: nanotechnology, biology, and medicine. 6:93-102. 2010
- Retinal homeobox 1 is required for retinal neurogenesis and photoreceptor differentiation in embryonic zebrafish. Developmental Biology. 328. 2009
- Age-related cone abnormalities in zebrafish with genetic lesions in sonic hedgehog. Investigative Ophthalmology and Visual Science. 49:4631-4640. 2008
- Ganglion cell regeneration following whole-retina destruction in zebrafish. Developmental Neurobiology. 68:166-188. 2008
- The developmental sequence of gene expression within the rod photoreceptor lineage in embryonic zebrafish. Developmental Dynamics. 237:2903-2917. 2008
- Differential expression of photoreceptor-specific genes in the retina of a zebrafish cadherin2 mutant glass onion and zebrafish cadherin4 morphants. Experimental Eye Research. 84:163-175. 2007
- Mechanisms for persistent microphthalmia following ethanol exposure during retinal neurogenesis in zebrafish embryos. Visual Neuroscience. 24:409-421. 2007
- Neurogenesis in the fish retina. International Review of Cytology. 259:173-224. 2007
- Interphotoreceptor retinoid-binding protein gene structure in tetrapods and teleost fish. Molecular Vision. 12:1565-1585. 2006
- The eye of the laboratory mouse remains anatomically adapted for natural conditions. Brain, Behavior, and Evolution. 67:39-52. 2006
- Targeted effects of retinoic acid signaling upon photoreceptor development in zebrafish. Developmental Biology. 287:157-167. 2005
- The interphotoreceptor retinoid-binding protein (IRBP) of the chicken (Gallus gallus domesticus). Molecular Vision. 11:833-845. 2005
- Extraretinal and retinal hedgehog signaling sequentially regulate retinal differentiation in zebrafish. Developmental Biology. 258:349-363. 2003
- Temporally-selective induction of hedgehog signaling promotes photoreceptor differentiation in embryonic zebrafish. Investigative Ophthalmology and Visual Science. 44:U59-U59. 2003
- Cellular pattern formation in the retina: retinal regeneration as a model system. Molecular Vision. 8:280-293. 2002
- Embryonic retinal gene expression in sonic-you mutant zebrafish. Developmental Dynamics. 225:344-350. 2002
- Evidence for two distinct mechanisms of neurogenesis and cellular pattern formation in regenerated goldfish retinas. Journal of Comparative Neurology. 431:363-381. 2001
- Expression of chicken interphotoreceptor retinoid-binding protein (IRBP).. Investigative Ophthalmology and Visual Science. 42:S356-S356. 2001
- Spatiotemporal patterns in the developing cone mosaic in teleost fish retina. Developmental Biology. 175:104-104. 2001
- Cone mosaic development in the goldfish retina is independent of rod neurogenesis and differentiation. Journal of Comparative Neurology. 423:227-242. 2000
- Function for Hedgehog genes in zebrafish retinal development. Developmental Biology. 220:238-252. 2000
- Distinctive cone photoreceptor patterns in regenerated goldfish retina. Investigative Ophthalmology and Visual Science. 41:S848-S848. 2000
- Effects of reduced hedgehog gene expression on retina-specific transcription factors in embryonic zebrafish. Investigative Ophthalmology and Visual Science. 41:S849-S849. 2000
- Expression of interphotoreceptor retinoid binding protein (IRBP) mRNA in the chicken retina. Investigative Ophthalmology and Visual Science. 41:S594-S594. 2000
- Localization of retinoic acid metabolizing enzymes and effects of retinoic acid on retina-specific transcription factors in zebrafish embryos. Investigative Ophthalmology and Visual Science. 41:S594-S594. 2000
- Interphotoreceptor retinoid-binding protein (IRBP) is expressed in the retinal pigment epithelium and pineal gland during zebrafish development. Investigative Ophthalmology and Visual Science. 38:1421-1421. 1998
- Spatiotemporal coordination of rod and cone photoreceptor differentiation in goldfish retina. Journal of Comparative Neurology. 382:272-284. 1997
- Does retinoic acid interact with Sonic hedgehog to affect photoreceptor development?. Investigative Ophthalmology and Visual Science. 38:1063-1063. 1997
- Molecular cloning and characterization of the putative ultraviolet-sensitive visual pigment of goldfish. Vision Research. 36:933-939. 1996
- Temporal expression of rod and cone opsins in embryonic goldfish retina predicts the spatial organization of the cone mosaic. Investigative Ophthalmology and Visual Science. 37:363-376. 1996
- Characterization of retinal differentiation in zebrafish lacking the sonic hedgehog gene. Developmental Biology. 235:226-226. 1996
- Control of IRBP mRNA expression differs between zebrafish and goldfish. Investigative Ophthalmology and Visual Science. 37:4195-4195. 1996
- Effects of retinoic acid on rod and cone differentiation in teleost fish. Molecular Biology of the Cell. 7:1848-1848. 1996
- Expression of interphotoreceptor retinoid-binding protein (IRBP) and opsin during zebrafish development. Investigative Ophthalmology and Visual Science. 37:709-709. 1996
- Life histories of rods and cones in adult goldfish retina. Investigative Ophthalmology and Visual Science. 37:2893-2893. 1996
- The zebrafish ultraviolet cone opsin reported previously is expressed in rods. Investigative Ophthalmology and Visual Science. 37:948-950. 1996
- Zebrafish interphotoreceptor retinoid-binding protein: Differential circadian expression among cone subtypes. Journal of Experimental Biology. 199:2775-2787. 1996
- Cell-type-specific And Developmental-stage-specific Metabolism And Storage Of Retinoids By Embryonic Chick Retinal Cells In Culture. Experimental Eye Research. 58:675-687. 1994
- Photomechanical Movements Of Cultured Embryonic Photoreceptors - Regulation By Exogenous Neuromodulators And By A Regulable Source Of Endogenous Dopamine. Journal of Neuroscience. 14:3083-3096. 1994
- Retinoid Effects In Purified Cultures Of Chick-embryo Retina Neurons And Photoreceptors. Investigative Ophthalmology and Visual Science. 34:2425-2436. 1993
- Photoreceptor Differentiation Of Isolated Retinal Precursor Cells Includes The Capacity For Photomechanical Responses. Proceedings of the National Academy of Sciences of the United States of America. 90:1982-1986. 1993
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chapter
- One-dimensional silica structures and their applications to the biological sciences. Nanomaterials for the Life Sciences: Nanostructured Oxides. Ed. Kumar, Challa S S R. 83-103. 2009
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conference paper
- Age–Related Abnormalities of Cone Photoreceptors in a Zebrafish Model. Investigative Ophthalmology and Visual Science. 1688-1688. 2005
- Localization of retinoic acid signaling components and effects of retinoic acid on photoreceptor development. Investigative Ophthalmology and Visual Science. B556. 2005
- Preliminary analysis of the developmental genetics of ganglion cell regeneration in zebrafish. Investigative Ophthalmology and Visual Science. 3223-3223. 2005
- Developmental Genetics of the Rod Photoreceptor Lineage in Zebrafish. Investigative Ophthalmology and Visual Science. 5315-5315. 2004
- Is ath5 expression regulated by hedgehog (Hh) signaling during zebrafish retinal development. Investigative Ophthalmology and Visual Science. U177-U177. 2002
- The eye phenotype of zebrafish lacking the sonic hedgehog gene. Investigative Ophthalmology and Visual Science. S734-S734. 2001
- Two phases of hedgehog gene function during zebrafish eye development revealed by the teratogenic alkaloid cyclopamine. Investigative Ophthalmology and Visual Science. S205-S205. 1999
- Opsin Expression In Embryonic Goldfish Retina And Pineal. Investigative Ophthalmology and Visual Science. S1055-S1055. 1995
- Retinoid Metabolism In Light Responsive Cultures Of Retinal Photoreceptors And Neurons Grown In The Absence Of Pigment Epithelial And Glial-cells. Investigative Ophthalmology and Visual Science. 832-832. 1993
- Cell type-specific metabolic fate of retinoids In glia-free and glia-containing embryonic retina cultures. Investigative Ophthalmology and Visual Science. 1182-1182. 1992
- Photomechanical Responses Of Cultured Embryonic Photoreceptors - Regulatory And Developmental Roles For Neuromodulators. Investigative Ophthalmology and Visual Science. 848-848. 1991