Publications in VIVO

Co-author Network

Andreas E Vasdekis Associate Professor

Positions

Participating Faculty, Institute for Modeling Collaboration and Innovation (IMCI)
Affiliate Faculty, Bioinformatics and Computational Biology , College of Science
Member, Institute for Bioinformatics and Evolutionary Studies (IBEST) , Institute for Interdisciplinary Data Sciences (IIDS)
Research Faculty, Institute for Health in the Human Ecosystem , University of Idaho
Associate Professor, Physics , College of Science 2016 -

Andreas received his PhD for his work in polymer photophysics and applications. Following a short spell at Caltech, he spent three years as a postdoctoral scholar at the Ecole Polytechnique Federale de Lausanne (Switzerland). Prior to joining the University of Idaho in October 2014, he was at the Pacific Northwest National Laboratory investigating metabolism at the single cell level.

Research Areas

Publications

selected publications

academic article
- Density fluctuations, homeostasis, and reproduction effects in bacteria. Communications Biology. 5. 2022
- Raman-probes for monitoring metabolites and nutrient fate in Yarrowia lipolytica using deuterated glucose. Biocatalysis and Agricultural Biotechnology. 39. 2022
- Airy light-sheet Raman imaging. Optics Express. 29:31941-31951. 2021
- Deep Learning Classification of Lipid Droplets in Quantitative Phase Images. PLOS One. 16:e0249196. 2021
- Photon-Sparse, Poisson Light-Sheet Microscopy. ACS Photonics. 2021
- Integrative Quantitative-phase and Airy Light-Sheet Imaging. Scientific Reports. 10:20150. 2020
- Eliciting the Impacts of Cellular Noise on Metabolic Trade-Offs by Quantitative Mass Imaging. Nature Communications. 10:848. 2019
- An unexpected phase transformation of ceria nanoparticles in aqueous media. Journal of Materials Research. 34:465-473. 2019
- Investigating the Impact of Phenotypic Heterogeneity on Antibiotic Response via 1D Microfluidic Confinement of Single Bacteria. Biophysical Journal. 116:440A-440A. 2019
- Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations. PLOS Genetics. 15:e1008458. 2019
- Stimuli responsive diffraction gratings in soft-composite materials. Journal of Physics D-Applied Physics. 52:53001. 2019
- Robust Microbial Cell Segmentation by Optical - Phase Thresholding with Minimal Processing Requirements. Cytometry Part A. 91.0:443.0-449.0. 2017
- Solvent immersion imprint lithography: A high-performance, semi-automated procedure. Biomicrofluidics. 11.0. 2017
- Exploiting Bioprocessing Fluctuations to Elicit the Mechanistics of De Novo Lipogenesis in Yarrowia lipolytica. PLOS One. 12. 2017
- Mesoscale Polymer Dissolution Probed by Raman Spectroscopy and Molecular Simulations. Journal of Physical Chemistry B. 120:10581-10587. 2016
- Optofluidics of plants. APL Photonics. 1. 2016
- Modular Polymer Biosensors by Solvent Immersion Imprint Lithography. Journal of Polymer Science Part B-Polymer Physics. 54:98-103. 2016
- Origins of Cell-to-Cell Bioprocessing Diversity and Implications of the Extracellular Environment Revealed at the Single-Cell Level. Scientific Reports. 5. 2015
- Solvent Immersion Lithography. Lab on a Chip. 14:2072-2072. 2014
- Single microbe trap and release in sub-microfluidics. Rsc Advances. 3:6343-6343. 2013
- Vesicle Photonics. Annual Reviews of Materials Research. 43:283-305. 2013
- Elastomer based optofluidic devices. Lab on a Chip. 12:3590-3590. 2012
- Optofluidic modulator based on peristaltic nematogen microflows. Nature Photonics. 5:235-235. 2011
- Microfluidic Assays for DNA Manipulation Based on a Block-copolymer Immobilization Strategy. Biomacromolecules. 11:827-827. 2010
- High-Gain Broadband Solid-State Optical Amplifier using a Semiconducting Copolymer. Advanced Materials. 21:107-110. 2009
- Picosecond gain switching of an organic semiconductor optical amplifier. Applied Physics Letters. 92. 2008
- Amplification of optical pulse sequences at a high repetition rate in a polymer slab waveguide. Applied Physics Letters. 91. 2007
- Fluidic fibre dye lasers. Optics Express. 15:3962-3967. 2007
- Silicon based organic semiconductor laser. Applied Physics Letters. 91. 2007
- Broadband solid state optical amplifier based on a semiconducting polymer. Applied Physics Letters. 89. 2006
- Diode pumped distributed Bragg reflector lasers based on a dye-to-polymer energy transfer blend. Optics Express. 14:9211-9216. 2006
- Low threshold edge emitting polymer distributed feedback laser based on a square lattice. Applied Physics Letters. 86. 2005
conference paper
- Imaging the competition between growth and production of self-assembled lipid droplets at the single-cell level. Optical Methods for Inspection, Characterization, and Imaging of Biomaterials IV. 2019
patent
- Surface Layers Sensors and Method of Making the Same by Solvent Immersion and Dopant Diffusion 2014
- Light Filter and Method for using such a filter 2012
review
- Enhancing single molecule imaging in optofluidics and microfluidics. International Journal of Molecular Science. 5135-5156. 2011

Background

education and training

Ph.D. in Physics, University of St. Andrews 2008
M.S. in Physics, University of St. Andrews 2003
B.S. in Physics, University of Athens, Greece 2002

Contact

full name

Andreas E Vasdekis