Adam G Jones Professor

academic article

• The relationship between sexual dimorphism and androgen response element proliferation in primate genomes.  Evolution.  76:1331-1346. 2022
• Correlational Selection in the Age of Genomics.  Nature Ecology and Evolution.  5:562-573. 2021
• Home Range Use in the West Australian Seahorse Hippocampus subelongatus is Influenced by sex and partner's home range But Not by Body Size or Paired Status.  Journal of Ethology.  2021
• The Population Genomics of Repeated Freshwater Colonizations by Gulf Pipefish.  Molecular Ecology.  30:1672-1687. 2021
• Nothobranchius furzeri as an Emerging Model for Mate Choice: Female Choice Revealed by Animations.  Behaviour.  158:35-49. 2021
• The 150th anniversary of The Descent of Man: Darwin and the impact of sex-role reversal on sexual selection research.  Biological Journal of the Linnean Society.  2021
• Quantifying the Causal Pathways Contributing to Natural Selection.  Evolution; International Journal of Organic Evolution.  2020
• The Estrogen-responsive Transcriptome of Female Secondary Sexual Traits in the Gulf Pipefish.  Journal of Heredity.  111:294-306. 2020
• Fisher's lost model of runaway sexual selection..  Evolution; International Journal of Organic Evolution.  74:487-494. 2020
• EREFinder: Genome-wide detection of estrogen response elements.  Molecular Ecology Resources.  19:1366-1373. 2019
• The future of parentage analysis: From microsatellites to SNPs and beyond.  Molecular Ecology.  28:544-567. 2019
• Fisher's lost model of runaway sexual selection.  Evolution; International Journal of Organic Evolution.  2019
• Sex roles and the evolution of parental care specialization.  Proceedings of the Royal Society B: Biological Sciences.  286:20191312. 2019
• The Effects of Epistasis and Pleiotropy on Genome-Wide Scans for Adaptive Outlier Loci..  The Journal of heredity.  110:494-513. 2019
• Substantial differences in bias between single-digest and double-digest RAD-seq libraries: A case study.  Molecular Ecology Resources.  18:264-280. 2018
• The G-matrix Simulator Family: Software for Research and Teaching.  Journal of Heredity.  109:825-829. 2018
• The lek mating system of the worm pipefish ( Nerophis lumbriciformis ): a molecular maternity analysis and test of the phenotype-linked fertility hypothesis.  Molecular Ecology.  26:1371-1385. 2017
• Parabolic variation in sexual selection intensity across the range of a cold-water pipefish: implications for susceptibility to climate change.  Global Change Biology.  23:3600-3609. 2017
• Genome-wide selection components analysis in a fish with male pregnancy: BRIEF COMMUNICATION.  Evolution.  71:1096-1105. 2017
• Mate quality and the temporal dynamics of breeding in a sex-role-reversed pipefish, S. typhle.  Behavioral Ecology and Sociobiology.  71. 2017
• The genome of the Gulf pipefish enables understanding of evolutionary innovations.  Genome Biology.  17. 2016
• A low rate of multiple maternity for pregnant male northern pipefish Syngnathus fuscus: multiple mating in syngnathus fucus.  Journal of Fish Biology.  88:1614-1619. 2016
• A DNA-Based Assessment of the Phylogenetic Position of a Morphologically Distinct, Anchialine-Lake-Restricted Seahorse.  Journal of Heredity.  107:553-558. 2016
• Population genomics reveals multiple drivers of population differentiation in a sex-role-reversed pipefish.  Molecular Ecology.  25:5043-5072. 2016
• The Effects of Synthetic Estrogen Exposure on the Sexually Dimorphic Liver Transcriptome of the Sex-Role-Reversed Gulf Pipefish.  PLOS One.  10:e0139401. 2015
• The Effects of Food Limitation on Life History Tradeoffs in Pregnant Male Gulf Pipefish.  PLOS One.  10:e0124147. 2015
• Multiple Mating and Reproductive Skew in Parental and Introgressed Females of the Live-Bearing Fish Xiphophorus Birchmanni.  Journal of Heredity.  106:57-66. 2015
• BATEMANATER: A computer program to estimate and bootstrap mating system variables based on Bateman's principles.  Molecular Ecology Resources.  1:13961402. 2015
• Effects of mating order and male size on embryo survival in a pipefish: Maternal and Paternal Effects.  Biological Journal of the Linnean Society.  114:639-645. 2015
• Identifying signatures of sexual selection using genomewide selection components analysis.  Ecology and Evolution.  5:2722-2744. 2015
• Validating the use of colouration patterns for individual recognition in the worm pipefish using a novel set of microsatellite markers.  Molecular Ecology Resources.  14:150-156. 2014
• Epistasis and natural selection shape the mutational architecture of complex traits.  Nature Communications.  5. 2014
• Genetic Evidence for Monogamy in the Dwarf Seahorse, Hippocampus zosterae.  Journal of Heredity.  105:922-927. 2014
• No evidence for size-assortative mating in the wild despite mutual mate choice in sex-role-reversed pipefishes.  Ecology and Evolution.  4:67-78. 2014
• Sexual selection on female ornaments in the sex-role-reversed Gulf pipefish ( Syngnathus scovelli ).  Journal of Evolutionary Biology.  27:2457-2467. 2014
• Functional similarity and molecular divergence of a novel reproductive transcriptome in two male-pregnant Syngnathus pipefish species.  Ecology and Evolution.  3:4092-4108. 2013
• Overcoming Statistical Bias To Estimate Genetic Mating Systems In Open Populations: A Comparison Of Bateman'S Principles Between The Sexes In A Sex-Role-Reversed Pipefish.  Evolution.  67:646-660. 2013
• Parental Care In The 21St Century: Book Review.  Evolution.  67:3379-3380. 2013
• The Contributions of Premating and Postmating Selection Episodes to Total Selection in Sex-Role-Reversed Gulf Pipefish.  American Naturalist.  182:410-420. 2013
• The Role of Courtship Behavior and Size in Mate Preference in the Sex-Role-Reversed Gulf Pipefish, Syngnathus scovelli.  Ethology.  119:692-701. 2013
• The effects of synthetic estrogen exposure on premating and postmating episodes of selection in sex-role-reversed Gulf pipefish.  Evolutionary Applications.  6:1160-1170. 2013
• Population Structure of the Gulf Pipefish in and around Mobile Bay and the Northern Gulf of Mexico.  Journal of Heredity.  103:821-830. 2012
• The opportunity for sexual selection: not mismeasured, just misunderstood: Opportunity for selection.  Journal of Evolutionary Biology.  24:2064-2071. 2011
• Evidence of paternal nutrient provisioning to embryos in broad-nosed pipefish Syngnathus typhle.  Journal of Fish Biology.  78:1725-1737. 2011
• Patterns of multiple paternity and maternity in fishes: MULTIPLE PATERNITY AND MATERNITY.  Biological Journal of the Linnean Society.  103:735-760. 2011
• The genetics and genomics of Syngnathidae: pipefishes, seahorses and seadragons.  Journal of Fish Biology.  78:1624-1646. 2011
• A practical guide to methods of parentage analysis.  Molecular Ecology Resources.  10:6-30. 2010
• Paczolt & Jones reply.  Nature.  466:E12-E12. 2010
• Population structure of the dusky pipefish (Syngnathus floridae) from the Atlantic and Gulf of Mexico, as revealed by mitochondrial DNA and microsatellite analyses: Phylogeography of the dusky pipefish.  Journal of Biogeography.  37:1363-1377. 2010
• Post-copulatory sexual selection and sexual conflict in the evolution of male pregnancy.  Nature.  464:401-404. 2010
• Short-term exposure to a synthetic estrogen disrupts mating dynamics in a pipefish.  Hormones and Behavior.  58:800-807. 2010
• A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: Evidence for masculinization of the transcriptome.  BMC Genomics.  10:579. 2009
• Environmental, demographic, and genetic mating system variation among five geographically distinct dusky pipefish (Syngnathus floridae) populations.  Molecular Ecology.  18:1476-1490. 2009
• Mate choice and sexual selection: What have we learned since Darwin?.  Proceedings of the National Academy of Sciences of the United States of America.  106:10001-10008. 2009
• Multiple mating and a low incidence of cuckoldry for nest-holding males in the two-spotted goby, Gobiusculus flavescens.  Bmc Evolutionary Biology.  9:6. 2009
• On The Opportunity For Sexual Selection, The Bateman Gradient And The Maximum Intensity Of Sexual Selection.  Evolution.  63:1673-1684. 2009
• Reproductive Isolation, Reproductive Mode, and Sexual Selection: Empirical Tests of the Viviparity‐Driven Conflict Hypothesis.  American Naturalist.  173:291-303. 2009
• Sex Recognition via Chemical Cues in the Sex-Role-Reversed Gulf Pipefish ( Syngnathus scovelli ).  Ethology.  115:339-346. 2009
• The effect of perceived female parasite load on post-copulatory male choice in a sex-role-reversed pipefish.  Behavioral Ecology and Sociobiology.  63:345-354. 2009
• A theoretical quantitative genetic study of negative ecological interactions and extinction times in changing environments.  Bmc Evolutionary Biology.  8:119. 2008
• Geographical variation in the mating system of the dusky pipefish (Syngnathus floridae).  Molecular Ecology.  16:2596-2606. 2007
• Sexually selected females in the monogamous Western Australian seahorse.  Proceedings of the Royal Society B: Biological Sciences.  274:521-525. 2007
• The Mutation Matrix And The Evolution Of Evolvability.  Evolution.  61:727-745. 2007
• An analysis of selection on a colour polymorphism in the northern leopard frog: SELECTION ON A COLOUR POLYMORPHISM.  Molecular Ecology.  15:2627-2641. 2006
• Gene cooption without duplication during the evolution of a male-pregnancy gene in pipefish.  Proceedings of the National Academy of Sciences of the United States of America.  103:19407-19412. 2006
• Male Pregnancy And The Evolution Of Body Segmentation In Seahorses And Pipefishes.  Evolution.  60:404-410. 2006
• Group stability and homing behavior but no kin group structures in a coral reef fish.  Behavioral Ecology.  16:521-527. 2005
• Genetic structure in the coral-reef-associated Banggai cardinalfish, Pterapogon kauderni.  Molecular Ecology.  14:1367-1375. 2005
• Multiple paternity in a natural population of a salamander with long-term sperm storage.  Molecular Ecology.  14:1803-1810. 2005
• The Measurement of Sexual Selection Using Bateman's Principles: An Experimental Test in the Sex-Role-Reversed Pipefish Syngnathus typhle.  Integrative and Comparative Biology.  45:874-884. 2005
• gerud 2.0: a computer program for the reconstruction of parental genotypes from half-sib progeny arrays with known or unknown parents.  Molecular Ecology Notes.  5:708-711. 2005
• Evidence for fine-scale genetic structure and estuarine colonisation in a potential high gene flow marine goby (Pomatoschistus minutus).  Heredity.  92:434-445. 2004
• Stabilizing Selection on Behavior and Morphology Masks Positive Selection on the Signal in a Salamander Pheromone Signaling Complex.  Molecular Biology and Evolution.  21:1032-1041. 2004
• Eleven polymorphic microsatellite loci in a coral reef fish, Pterapogon kauderni.  Molecular Ecology Notes.  4:342-344. 2004
• Evolution And Stability Of The G-Matrix On A Landscape With A Moving Optimum.  Evolution.  58:1639-1654. 2004
• Male pregnancy and the formation of seahorse species.  The Biologist.  51:216-221. 2004
• Molecular Parentage Analysis in Experimental Newt Populations: The Response of Mating System Measures to Variation in the Operational Sex Ratio.  American Naturalist.  164:444-456. 2004
• Sea Turtles: Old Viruses and New Tricks.  Current Biology.  14:R842-R843. 2004
• Male pregnancy.  Current Biology.  13:R791. 2003
• Methods of parentage analysis in natural populations.  Molecular Ecology.  12:2511-2523. 2003
• Stability Of The G-Matrix In A Population Experiencing Pleiotropic Mutation, Stabilizing Selection, And Genetic Drift.  Evolution.  57:1747-1760. 2003
• Sympatric speciation as a consequence of male pregnancy in seahorses.  Proceedings of the National Academy of Sciences of the United States of America.  100:6598-6603. 2003
• The Evolution Of Alternative Cryptic Female Choice Strategies In Age-Structured Populations.  Evolution.  56:2530-2536. 2002
• Genetic Mating Systems and Reproductive Natural Histories of Fishes: Lessons for Ecology and Evolution.  Annual Review of Genetics.  36:19-45. 2002
• Topping off: A mechanism of first-male sperm precedence in a vertebrate.  Proceedings of the National Academy of Sciences of the United States of America.  99:2078-2081. 2002
• Validation of Bateman's principles: a genetic study of sexual selection and mating patterns in the rough-skinned newt.  Proceedings of the Royal Society B: Biological Sciences.  269:2533-2539. 2002
• gerud1.0: a computer program for the reconstruction of parental genotypes from progeny arrays using multilocus DNA data: PROGRAM NOTE.  Molecular Ecology Notes.  1:215-218. 2002
• The genetic mating system and tests for cuckoldry in a pipefish species in which males fertilize eggs and brood offspring externally: PIPEFISH MATING SYSTEM.  Molecular Ecology.  10:1793-1800. 2001
• Genetic evidence for extreme polyandry and extraordinary sex-role reversal in a pipefish.  Proceedings of the Royal Society B: Biological Sciences.  268:2531-2535. 2001
• Genetic variation in two populations of the rough-skinned newt (Taricha granulosa) assessed using novel tetranucleotide microsatellite loci.  Molecular Ecology Notes.  1:293-296. 2001
• How cuckoldry can decrease the opportunity for sexual selection: Data and theory from a genetic parentage analysis of the sand goby, Pomatoschistus minutus.  Proceedings of the National Academy of Sciences of the United States of America.  98:9151-9156. 2001
• Surprising similarity of sneaking rates and genetic mating patterns in two populations of sand goby experiencing disparate sexual selection regimes.  Molecular Ecology.  10:461-469. 2001
• The Adaptive Landscape as a Conceptual Bridge Between Micro- and Macroevolution.  Genetica.  112/113:9-32. 2001
• Mate quality influences multiple maternity in the sex-role-reversed pipefish Syngnathus typhle.  Oikos.  90:321-326. 2000
• Monogamous pair bonds and mate switching in the Western Australian seahorse Hippocampus subelongatus.  Journal of Evolutionary Biology.  13:882-888. 2000
• The Bateman gradient and the cause of sexual selection in a sex-role-reversed pipefish.  Proceedings of the Royal Society B: Biological Sciences.  267:677-680. 2000
• Microsatellite assessment of multiple paternity in natural populations of a live-bearing fish, Gambusia holbrooki.  Journal of Evolutionary Biology.  12:61-69. 1999
• Clustered microsatellite mutations in the pipefish Syngnathus typhle.  Genetics.  152:1057-1063. 1999
• The genetic mating system of a sex-role-reversed pipefish ( Syngnathus typhle ): a molecular inquiry.  Behavioral Ecology and Sociobiology.  46:357-365. 1999
• A Microsatellite Assessment Of Sneaked Fertilizations And Egg Thievery In The Fifteenspine Stickleback.  Evolution.  52:848-858. 1998
• Brief communication. The molecular basis of a microsatellite null allele from the white sands pupfish.  Journal of Heredity.  89:339-342. 1998
• Genetic evidence for two evolutionarily significant units of White Sands pupfish.  Animal Conservation.  1:213-225. 1998
• Microsatellite evidence for monogamy and sex-biased recombination in the Western Australian seahorse Hippocampus angustus.  Molecular Ecology.  7:1497-1505. 1998
• Microsatellite analysis of maternity and the mating system in the Gulf pipefish Syngnathus scovelli, a species with male pregnancy and sex-role reversal.  Molecular Ecology.  6:203-213. 1997
• Polygynandry In The Dusky Pipefish Syngnathus Floridae Revealed By Microsatellite DNA Markers.  Evolution.  51:1611-1622. 1997