selected publications
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academic article
- Mapping the Fitness Landscape of Gene Expression Uncovers the Cause of Antagonism and Sign Epistasis between Adaptive Mutations. PLOS Genetics. 10. 2014
- Clarity: An Open-Source Manager for Laboratory Automation. JALA. 18:171-177. 2013
- Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens. PLOS ONE. 8. 2013
- The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum. PLOS Computational Biology. 9. 2013
- FREQ-Seq: A Rapid, Cost-Effective, Sequencing-Based Method to Determine Allele Frequencies Directly from Mixed Populations. PLOS ONE. 7. 2012
- Ultrafast Evolution and Loss of CRISPRs Following a Host Shift in a Novel Wildlife Pathogen, Mycoplasma gallisepticum. PLOS Genetics. 8. 2012
- Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation. Science. 332:1190-1192. 2011