selected publications
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academic article
- Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae). Systematic Biology. 2021
- Can functional genomic diversity provide novel insights into mechanisms of community assembly? A pilot study from an invaded alpine streambed. Ecology and Evolution. 11:12075-12091. 2021
- Three New Species of Lachemilla (Rosaceae) from South America. Phytokeys. 93-119. 2019
- Phylogeny of the Australian Solanum dioicum group using seven nuclear genes, with consideration of Symon's fruit and seed dispersal hypotheses. PLOS One. 14:e0207564. 2019
- Integrating life history traits into predictive phylogeography. Molecular Ecology. 28:2062-2073. 2019
- Chloroplast primers for clade-wide phylogenetic studies of Thalictrum. Applications in Plant Sciences. 2019
- Extensive allopolyploidy in the neotropical genus Lachemilla (Rosaceae) revealed by PCR-based target enrichment of the nuclear ribosomal DNA cistron and plastid phylogenomics. American Journal of Botany. 106:415-437. 2019
- Increasing phylogenetic stochasticity at high elevations on summits across a remote North American wilderness.. American Journal of Botany. 2019
- Quantifying morphological variation in the Castilleja pilosa species complex (Orobanchaceae). PeerJ. 7:e7090. 2019
- Predicting plant conservation priorities on a global scale. Proceedings of the National Academy of Sciences of the United States of America. 115:13027-13032. 2018
- Species Tree Estimation using ddRADseq Data from Historical Specimens Confirms the Monophyly of Highly Disjunct Species of Chloropyron (Orobanchaceae). Systematic Botany. 43:701-708. 2018
- Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae).. New Phytologist. 218:1668-1684. 2018
- Combining allele frequency and tree-based approaches improves phylogeographic inference from natural history collections. Molecular Ecology. 27:1012-1024. 2018
- Fluidigm2PURC: Automated processing and haplotype inference for double-barcoded PCR amplicons. Applications in Plant Sciences. 6. 2018
- Impact of whole-genome duplication events on diversification rates in angiosperms. American Journal of Botany. 105:348-363. 2018
- Incongruence in molecular species delimitation schemes: What to do when adding more data is difficult. Molecular Ecology. 27:2397-2413. 2018
- Testing for the presence of cryptic diversity in tail-dropper slugs (Prophysaon) using molecular data. Biological Journal of the Linnean Society. 124:518-532. 2018
- Riders in the sky (islands): Using a mega-phylogenetic approach to understand plant species distribution and coexistence at the altitudinal limits of angiosperm plant life. Journal of Biogeography. 44:2618-2630. 2017
- Primers for Castilleja and Their Utility Across Orobanchacae: I. Chloroplast Primers. Applications in Plant Sciences. 5.0. 2017
- Primers for Castilleja and Their Utility Across Orobanchacae: II. Single-copy Nuclear Loci. Applications in Plant Sciences. 5.0. 2017
- Demographic Model Selection using Random Forests and the Site Frequency Spectrum.. Molecular Ecology. 26:4562-4573. 2017
- Identifying cryptic diversity with predictive phylogeography. Proceedings of the Royal Society B: Biological Sciences. 283. 2016
- Phylogenetic revision of the genus Bartsia (Orobanchaceae): disjunct distributions correlate to independent lineages. Systematic Botany. 41:672-684. 2016
- Deconstructing Darwin's Naturalization Conundrum in the San Juan Islands using community phylogenetics and functional traits. Diversity and Distributions. 22:318-331. 2016
- A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae). PLOS One. 11:e0148203. 2016
- Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications. New Phytologist. 207:454-467. 2015
- Oligocene niche shift, Miocene diversification - cold tolerance and accelerated speciation rates in the St. John's Worts (Hypericum, Hypericaceae). Bmc Evolutionary Biology. 15. 2015
- Exclusionary interactions among diverse fungi infecting developing seeds of Centaurea stoebe. FEMS Microbiology Ecology. 84:143-153. 2013
- A Southern Hemisphere Origin for Campanulid Angiosperms, With Traces of The Break-up of Gondwana. Bmc Evolutionary Biology. 13. 2013
- Congruification: support for time scaling large phylogenetic trees. Methods in Ecology and Evolution. 4:688-691. 2013
- Homoploid Hybrid Speciation in A Rare Endemic Castilleja From Idaho (castilleja Christii, Orobanchaceae). American Journal of Botany. 99:1976-1990. 2012
- Castelleja ambigua var. meadii (orobanchaceae): a new variety from Napa County, California. Phytoneuron. 1-12. 2012
- Species Designation of The Bruneau Dune Tiger Beetle (cicindela Waynei) Is Supported by Phylogenetic Analysis of Mitochondrial Dna Sequence Data. Conservation Genetics. 13:373-380. 2012
- Angiosperm Phylogeny: 17 Genes, 640 Taxa. American Journal of Botany. 98:704-730. 2011
- A Molecular Phylogeny and Classification of Verbenaceae. American Journal of Botany. 97:1647-1663. 2010
- Phylogeny and Phylogenetic Nomenclature of The Campanulidae Based on An Expanded Sample of Genes and Taxa. Systematic Botany. 35:425-441. 2010
- An Update of The Angiosperm Phylogeny Group Classification for The Orders and Families of Flowering Plants: Apg III. Botanical Journal of the Linnean Society. 161:105-121. 2009
- Phylogenetic Classification of Subtribe Castillejinae (orobanchaceae). Systematic Botany. 34:182-197. 2009
- The Evolutionary Origin of A Second Radiation of Annual Castilleja (orobanchaceae) Species in South America: The Role of Long Distance Dispersal and Allopolyploidy. American Journal of Botany. 96:1907-1921. 2009
- Bioactive Endophytes Warrant intensified Exploration and Conservation. PLOS One. 3. 2008
- From Annuals to Perennials: Phylogeny of Subtribe Castillernae (orobanchaceae). American Journal of Botany. 95:608-625. 2008
- Review of the Systematics of Scrophulariaceae S.L. and their Current Disposition. Australian Systematic Botany. 19:289-307. 2006
- Phylogenetic Utility of The Glycerol-3-phosphate Acyltransferase Gene: Evolution and Implications in Paeonia (paeoniaceae). Molecular Phylogenetics and Evolution. 19:421-429. 2001
- Phylogeny and Divergence Times in Pinaceae: Evidence From Three Genomes. Molecular Biology and Evolution. 17:773-781. 2000
- Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival. Ecology and Evolution.